Here is a list of all functions with links to the classes they belong to:
- o -
- Object() : BALL::Object
- ObjectCreator() : BALL::ObjectCreator
- OccupancyColorProcessor() : BALL::VIEW::OccupancyColorProcessor
- okPreferencesClicked_() : BALL::VIEW::MainControl
- okPressed() : BALL::VIEW::DockDialog, BALL::VIEW::SetCamera, BALL::VIEW::SetClippingPlane, BALL::VIEW::StereoSettingsDialog
- onClick() : BALL::VIEW::ShortcutTableView
- oneBackwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
- oneForwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
- onItemClicked() : BALL::VIEW::GenericControl, BALL::VIEW::GeometricControl, BALL::VIEW::MolecularControl
- onNotify() : BALL::VIEW::ConnectionObject, BALL::VIEW::DatasetControl, BALL::VIEW::DemoTutorialDialog, BALL::VIEW::DisplayProperties, BALL::VIEW::DockingController, BALL::VIEW::GenericControl, BALL::VIEW::GeometricControl, BALL::VIEW::HelpViewer, BALL::VIEW::LabelDialog, BALL::VIEW::MainControl, BALL::VIEW::ModifyRepresentationDialog, BALL::VIEW::MolecularControl, BALL::VIEW::MolecularFileDialog, BALL::VIEW::MolecularStructure, BALL::VIEW::Scene, BALL::VIEW::UndoManagerDialog
- onNotify_() : BALL::VIEW::ConnectionObject
- onNotifyDemo_() : BALL::VIEW::DemoTutorialDialog
- onNotifyRaytracingTutorial_() : BALL::VIEW::DemoTutorialDialog
- onNotifyTutorial_() : BALL::VIEW::DemoTutorialDialog
- open() : BALL::AmiraMeshFile, BALL::CCP4File, BALL::DCDFile, BALL::DSN6File, BALL::File, BALL::HMOFile, BALL::MolFileFactory, BALL::PDBFile, BALL::ResourceFile, BALL::TrajectoryFileFactory, BALL::VIEW::DatasetController, BALL::VIEW::DockResultController, BALL::VIEW::RegularData3DController, BALL::VIEW::TrajectoryController, BALL::VIEW::VectorGridController
- openACFile() : BALL::VIEW::MolecularFileDialog
- openFile() : BALL::VIEW::DatasetControl, BALL::VIEW::MainControl, BALL::VIEW::ModularWidget, BALL::VIEW::MolecularFileDialog, BALL::VIEW::PyWidget, BALL::VIEW::TestFramework
- openFile_() : BALL::VIEW::MolecularFileDialog
- openHINFile() : BALL::VIEW::MolecularFileDialog
- openItems() : BALL::VIEW::NewSelectionMessage
- openMOL2File() : BALL::VIEW::MolecularFileDialog
- openMolecularFile() : BALL::VIEW::MolecularFileDialog
- openMOLFile() : BALL::VIEW::MolecularFileDialog
- openPDBFile() : BALL::VIEW::MolecularFileDialog
- OpenSavePreferences() : BALL::VIEW::OpenSavePreferences
- openSDFile() : BALL::VIEW::MolecularFileDialog
- openXYZFile() : BALL::VIEW::MolecularFileDialog
- operator BitVector &() : BALL::PropertyManager
- operator bool() : BALL::Bit
- operator char() : BALL::VIEW::ColorUnit
- operator const Position &() : BALL::BaseIterator< Container, DataType, Position, Traits >
- operator delete() : BALL::AutoDeletable
- operator double() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator float() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator int() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator long() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator long double() : BALL::VIEW::ColorUnitHue
- operator new() : BALL::AutoDeletable
- operator short() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator String() : BALL::Substring, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator string &() : BALL::String
- operator string const &() : BALL::String
- operator T() : BALL::TAngle< T >
- operator unsigned char() : BALL::VIEW::ColorUnit
- operator unsigned int() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator unsigned long() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator unsigned short() : BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator!=() : BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::Bit, BALL::BitVector, BALL::Bond, BALL::Chain, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::Composite, BALL::CompositeIteratorTraits, BALL::Conformation, BALL::CosineTorsion::Values, BALL::Directory, BALL::EdgeItem< Node, Edge >, BALL::Element, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::EnumeratorIndex, BALL::ExpressionTree, BALL::File, BALL::Fragment, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashGridBox3< Item >, BALL::HashSet< Key >::IteratorTraits, BALL::HashSet< Key >, BALL::INIFile::IteratorTraits_, BALL::JCAMPFile::JCAMPValue, BALL::JCAMPFile, BALL::JohnsonBoveyShiftProcessor::Ring, BALL::LineBasedFile, BALL::List< Value >, BALL::Molecule, BALL::NamedProperty, BALL::NMRStarFile, BALL::NodeItem< Node, Edge >, BALL::NucleicAcid, BALL::Nucleotide, BALL::Object, BALL::Options, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::PropertyManager, BALL::Protein, BALL::QuadraticImproperTorsion::Values, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::Residue, BALL::ResidueTorsions::Data, BALL::ResourceEntry::IteratorTraits_, BALL::ResourceEntry, BALL::ResourceFile, BALL::RSEdge, BALL::RSFace, BALL::RSVertex, BALL::SASEdge, BALL::SASFace, BALL::SASVertex, BALL::SecondaryStructure, BALL::Selectable, BALL::SESEdge, BALL::SESFace, BALL::SESVertex, BALL::String, BALL::StringHashMap< Key >, BALL::Substring, BALL::System, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::Timer, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::Triangle, BALL::TriangleEdge, BALL::TrianglePoint, BALL::Triple< T1, T2, T3 >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TSurface< T >, BALL::TSurface< T >::Triangle, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::ChannelFormat, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::FrameBufferFormat, BALL::VIEW::PixelFormat
- operator%() : BALL::TVector3< T >
- operator%=() : BALL::TVector3< T >
- operator&() : BALL::BitVector, BALL::HashSet< Key >
- operator&=() : BALL::BitVector, BALL::HashSet< Key >
- operator()() : BALL::AddHydrogenProcessor, BALL::Addition< First, Second, DataType >, BALL::AnisotropyShiftProcessor, BALL::AromaticBondsPredicate, BALL::AromaticityProcessor, BALL::AssignBondOrderProcessor, BALL::AssignChargeProcessor, BALL::AssignRadiusProcessor, BALL::AssignTypeNameProcessor, BALL::AssignTypeProcessor, BALL::AtomNamePredicate, BALL::AtomTypePredicate, BALL::AxialPredicate, BALL::BackBonePredicate, BALL::BinaryPredicate< T1, T2 >, BALL::BinaryProcessor< T1, T2 >, BALL::BindingPocketProcessor, BALL::BitVector, BALL::BoundingBoxProcessor, BALL::BuildBondsProcessor, BALL::ChainPredicate, BALL::ChargePredicate, BALL::ChargeRuleProcessor, BALL::ClearChargeProcessor, BALL::ClearRadiusProcessor, BALL::ClearShiftProcessor, BALL::Comparator< T >, BALL::Conformation4C1Predicate, BALL::ConnectedComponentsProcessor, BALL::ConnectedToPredicate, BALL::ConstantFunction< constant_template >, BALL::ConstBinaryProcessor< T1, T2 >, BALL::ConstUnaryProcessor< T >, BALL::CreateSpectrumProcessor, BALL::CubicFunction< Function, DataType >, BALL::CubicSpline1D, BALL::CubicSpline2D, BALL::Descriptor, BALL::DisulfidBondProcessor, BALL::Division< First, Second, DataType >, BALL::DockResult::Compare_, BALL::DockResult, BALL::DoubleBondsPredicate, BALL::EFShiftProcessor, BALL::ElectrostaticPotentialCalculator, BALL::ElementPredicate, BALL::EmpiricalHSShiftProcessor, BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_, BALL::EnergeticEvaluation, BALL::EnergyProcessor, BALL::Expression, BALL::ExpressionPredicate, BALL::ExpressionTree, BALL::FalsePredicate, BALL::ForceFieldEvaluation, BALL::FPTBondOrderStrategy::DPBackTracking_::StateComparator_, BALL::FPTBondOrderStrategy::DPJoinMapComparator_, BALL::FPTBondOrderStrategy::EdgeComparator_, BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_, BALL::FragmentDB::BuildBondsProcessor, BALL::FragmentDB::NormalizeNamesProcessor, BALL::FragmentDistanceCollector, BALL::GAFFCESParser::APSMatcher, BALL::GAFFCESParser::CESPredicate, BALL::GAFFTypeProcessor, BALL::GeometricCenterProcessor, BALL::GRAPH::EditableEdgeCopier< Graph1, Graph2 >, BALL::GRAPH::EditableVertexCopier< Graph1, Graph2 >, BALL::HaighMallionShiftProcessor, BALL::HBondProcessor, BALL::HBondShiftProcessor, BALL::HybridisationProcessor, BALL::InRingPredicate, BALL::JohnsonBoveyShiftProcessor, BALL::KernelPredicate< T >, BALL::KernelPredicate< Atom >, BALL::KernelPredicate< Chain >, BALL::KernelPredicate< Fragment >, BALL::KernelPredicate< Molecule >, BALL::KernelPredicate< Protein >, BALL::KernelPredicate< Residue >, BALL::MMFF94ChargeProcessor, BALL::MoleculePredicate, BALL::MutableConstant< DataType >, BALL::MutablePower< Function, DataType >, BALL::NMRStarFile::BALLToBMRBMapper, BALL::NucleicAcidPredicate, BALL::NucleotidePredicate, BALL::NumberOfBondsPredicate, BALL::NumericalSAS, BALL::ObjectCreator, BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator, BALL::ParsedFunction< arg >, BALL::PartialChargeProcessor, BALL::PeptideCapProcessor, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PoseClustering::ClusterTreeNodeComparator, BALL::PoseClustering::ClusterTreeWriter_, BALL::Product< First, Second, DataType >, BALL::ProteinPredicate, BALL::RadialDistributionFunction, BALL::RadiusRuleProcessor, BALL::RandomCoilShiftProcessor, BALL::RandomEvaluation, BALL::RDFIntegrator, BALL::Reciprocal< Function, DataType >, BALL::ReconstructFragmentProcessor, BALL::ResidueChecker, BALL::ResidueIDPredicate, BALL::ResiduePredicate, BALL::ResidueRotamerSet::RotamerProbabilityGreaterThan_, BALL::RingAnalyser, BALL::RingFinder, BALL::RingPerceptionProcessor, BALL::RuleEvaluator, BALL::SDGenerator::AtomComparator, BALL::SecondaryStructurePredicate, BALL::SecondaryStructureProcessor, BALL::SelectedPredicate, BALL::Selector, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::ShiftModel, BALL::SideChainPlacementProcessor, BALL::SimpleExperiment1D, BALL::SingleBondsPredicate, BALL::SMARTSPredicate, BALL::SolventPredicate, BALL::Sp2HybridizedPredicate, BALL::Sp3HybridizedPredicate, BALL::SpHybridizedPredicate, BALL::SquareFunction< Function, DataType >, BALL::String, BALL::Subtraction< First, Second, DataType >, BALL::SurfaceProcessor, BALL::TMatrix4x4< T >, BALL::TransformationProcessor, BALL::TranslationProcessor, BALL::TreeWidth< UndirectedGraph >::BagContentWriter, BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >, BALL::TreeWidthImplementation< UndirectedGraph >::FillInHeuristic, BALL::TreeWidthImplementation< UndirectedGraph >::GeneralLowerBoundAlgorithm< Criterion, Reducer >, BALL::TreeWidthImplementation< UndirectedGraph >::GreedyX< Criterion >, BALL::TreeWidthImplementation< UndirectedGraph >::MinorMinWidthCriterion, BALL::TreeWidthImplementation< UndirectedGraph >::MinorMinWidthReducer, BALL::TreeWidthImplementation< UndirectedGraph >::TreeDecompositionBuilder< OriginalGraphType >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::TripleBondsPredicate, BALL::TruePredicate, BALL::TypenameRuleProcessor, BALL::TypeRuleProcessor, BALL::UnaryPredicate< T >, BALL::UnaryProcessor< T >, BALL::VIEW::AddBackboneModel, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AddLineModel, BALL::VIEW::AddSurfaceModel, BALL::VIEW::AddVanDerWaalsModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::AtomDistanceColorProcessor, BALL::VIEW::AtomOverview::ApplyProcessor, BALL::VIEW::AtomOverview::OverviewProcessor, BALL::VIEW::ColorByGridProcessor, BALL::VIEW::ColorProcessor, BALL::VIEW::DockResultDialog::Compare_, BALL::VIEW::ForceModel, BALL::VIEW::HBondModelProcessor, BALL::VIEW::LabelModel, boost::hash< BALL::Quadruple< T1, T2, T3, T4 > >, boost::hash< BALL::SortedPosition2 >, boost::hash< BALL::SortedPosition3 >, boost::hash< BALL::String >, boost::hash< BALL::Triple< T1, T2, T3 > >, boost::hash< RTpieCpp::InstanceHandle >, boost::hash< RTpieCpp::MeshHandle >
- operator*() : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::Gradient, BALL::INIFile::IteratorTraits_, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator*=() : BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::RSEdge, BALL::RSFace, BALL::RSVertex, BALL::SASEdge, BALL::SASFace, BALL::SASVertex, BALL::SESEdge, BALL::SESFace, BALL::SESVertex, BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::Triangle, BALL::TriangleEdge, BALL::TrianglePoint, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator+() : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::INIFile::IteratorTraits_, BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator++() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstForwardIterator< Container, DataType, Position, Traits >, BALL::EnumeratorIndex, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::INIFile::IteratorTraits_
- operator+=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::Result, BALL::ScoreGridSet, BALL::String, BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TriangulatedSurface, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator-() : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator--() : BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >, BALL::EnumeratorIndex, BALL::INIFile::IteratorTraits_
- operator-=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::HashSet< Key >, BALL::ScoreGridSet, BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator->() : BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BidirectionalIterator< Container, DataType, Position, Traits >, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::LogStream, BALL::RandomAccessIterator< Container, DataType, Position, Traits >
- operator/() : BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator/=() : BALL::TAngle< T >, BALL::TMatrix4x4< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >
- operator<() : BALL::Atom::BondIteratorTraits, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Element, BALL::EnumeratorIndex, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::GeneticIndividual, BALL::GeometricFit::Peak_, BALL::INIFile::Section, BALL::Object, BALL::PartialBondOrderAssignment, BALL::PDBRecords, BALL::Peak< PositionType >, BALL::PreciseTime, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::RotateBond, BALL::SortedPosition2, BALL::SortedPosition3, BALL::String, BALL::TAngle< T >, BALL::Timer, BALL::Triple< T1, T2, T3 >, BALL::TVector3< T >, BALL::VIEW::Camera, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::GeometricObject, BALL::VIEW::Hotkey, BALL::VIEW::LightSource, BALL::VIEW::Representation
- operator<<() : BALL::EnumeratorIndex, BALL::GenericMolFile, BALL::PDBFile, BALL::PersistenceManager, BALL::TContourSurface< T >
- operator<=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Element, BALL::EnumeratorIndex, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::Object, BALL::PDBRecords, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::String, BALL::TAngle< T >, BALL::Timer, BALL::Triple< T1, T2, T3 >, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator=() : BALL::Addition< First, Second, DataType >, BALL::AmberFF, BALL::AmberNonBonded, BALL::AromaticityProcessor, BALL::AssignBondOrderProcessor, BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::AtomContainerIteratorTraits, BALL::AtomicPolarizabilities, BALL::AtomInformationContent, BALL::AtomIteratorTraits, BALL::AtomTypes, BALL::AtomVector, BALL::BalabanIndexJ, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::BinaryFingerprintMethods, BALL::BindingPocketProcessor, BALL::Bit, BALL::BitVector, BALL::Bond, BALL::BondPolarizabilities, BALL::BuildBondsProcessor, BALL::BuriedPolar, BALL::CanonicalMD, BALL::Chain, BALL::ChainIteratorTraits, BALL::CharmmEEF1, BALL::CharmmFF, BALL::CharmmNonBonded, BALL::CHPI, BALL::CHPISlick, BALL::ClaverieParameter, BALL::ComposedEnergyProcessor, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::Composite, BALL::CompositeIteratorTraits, BALL::ConjugateGradientMinimizer, BALL::ConnectivityBase, BALL::ConstForwardIterator< Container, DataType, Position, Traits >, BALL::CosineTorsion, BALL::CubicFunction< Function, DataType >, BALL::Density, BALL::Descriptor, BALL::Directory, BALL::Division< First, Second, DataType >, BALL::DockResult, BALL::DockResult::Scoring_, BALL::DoubleParameter, BALL::Element, BALL::EnergyMinimizer, BALL::EnergyProcessor, BALL::EnumeratorIndex, BALL::Expression, BALL::ExpressionPredicate, BALL::ExpressionTree, BALL::ForceField, BALL::ForceFieldParameters, BALL::FormalCharge, BALL::ForwardIterator< Container, DataType, Position, Traits >, BALL::FPTBondOrderStrategy::AdditionalBagProperties_, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPBackTracking_, BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::Fragment, BALL::FragmentDB, BALL::FragmentIteratorTraits, BALL::GAMESSDatFile, BALL::GAMESSLogFile, BALL::GenericMolFile, BALL::GenericParameter, BALL::GeneticAlgorithm, BALL::GeneticIndividual, BALL::Gradient, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashSet< Key >::IteratorTraits, BALL::HashSet< Key >, BALL::HINFile, BALL::HybridisationProcessor, BALL::HydrogenBond, BALL::HydrogenBondSlick, BALL::HydrophobicVdWSurface, BALL::INIFile::IteratorTraits_, BALL::INIFile, BALL::JCAMPFile, BALL::KCFFile, BALL::LennardJones, BALL::LineBasedFile, BALL::LineSearch, BALL::Lipophilic, BALL::List< Value >, BALL::MeanAtomInformationContent, BALL::MicroCanonicalMD, BALL::MMFF94, BALL::MMFF94BendParameters, BALL::MMFF94ChargeProcessor, BALL::MMFF94ESParameters, BALL::MMFF94NonBonded, BALL::MMFF94ParametersBase, BALL::MMFF94PlaneParameters, BALL::MMFF94StretchBendParameters, BALL::MMFF94StretchParameters, BALL::MMFF94TorsionParameters, BALL::MMFF94VDWParameters, BALL::MOL2File, BALL::MolecularDynamics, BALL::MolecularWeight, BALL::Molecule, BALL::MoleculeIteratorTraits, BALL::MOLFile, BALL::MutableConstant< DataType >, BALL::MutablePower< Function, DataType >, BALL::NamedProperty, BALL::NegativePolarVdWSurface, BALL::NegativeVdWSurface, BALL::NonpolarSolvation, BALL::NucleicAcid, BALL::NucleicAcidIteratorTraits, BALL::Nucleotide, BALL::NucleotideIteratorTraits, BALL::NumberOfAromaticAtoms, BALL::NumberOfAromaticBonds, BALL::NumberOfAtoms, BALL::NumberOfBonds, BALL::NumberOfBoron, BALL::NumberOfBromine, BALL::NumberOfCarbon, BALL::NumberOfChlorine, BALL::NumberOfDoubleBonds, BALL::NumberOfFlourine, BALL::NumberOfHeavyAtoms, BALL::NumberOfHeavyBonds, BALL::NumberOfHydrogen, BALL::NumberOfHydrogenBondAcceptors, BALL::NumberOfHydrogenBondDonors, BALL::NumberOfHydrophobicAtoms, BALL::NumberOfIodine, BALL::NumberOfNitrogen, BALL::NumberOfOxygen, BALL::NumberOfPhosphorus, BALL::NumberOfRotatableBonds, BALL::NumberOfRotatableSingleBonds, BALL::NumberOfSingleBonds, BALL::NumberOfSulfur, BALL::NumberOfTripleBonds, BALL::NumericalIntegrator< Function, DataType >, BALL::Object, BALL::Options, BALL::Pair6_12InteractionEnergyProcessor, BALL::Pair6_12RDFIntegrator, BALL::PairExpInteractionEnergyProcessor, BALL::PairExpRDFIntegrator, BALL::Parameters, BALL::ParameterSection, BALL::PartialChargeBase, BALL::PartialChargeProcessor, BALL::PCMCavFreeEnergyProcessor, BALL::PDBAtom, BALL::PDBAtomIteratorTraits, BALL::PDBFile, BALL::PDBInfo, BALL::PDBRecords, BALL::Peak< PositionType >, BALL::PeriodicBoundary, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PierottiCavFreeEnergyProcessor, BALL::PLP, BALL::PluginManager, BALL::Polarity, BALL::PolarSolvation, BALL::PolarVdWSurface, BALL::PoseClustering::ClusterProperties, BALL::PositivePolarVdWSurface, BALL::PositiveVdWSurface, BALL::Potential1210, BALL::PreciseTime, BALL::PrincipalMomentOfInertia, BALL::PrincipalMomentOfInertiaX, BALL::PrincipalMomentOfInertiaY, BALL::PrincipalMomentOfInertiaZ, BALL::Product< First, Second, DataType >, BALL::PropertyManager, BALL::Protein, BALL::ProteinIteratorTraits, BALL::PTE_, BALL::PyCompositeList, BALL::PyDatasetVector, BALL::PyIndexList, BALL::QSAR::ClassificationModel, BALL::QSAR::KernelModel, BALL::QSAR::LinearModel, BALL::QSAR::Model, BALL::QSAR::RegressionModel, BALL::QuadraticImproperTorsion, BALL::Quadruple< T1, T2, T3, T4 >, BALL::QuaternionParameter, BALL::RadialDistributionFunction, BALL::RDFIntegrator, BALL::RDFParameter, BALL::RDFSection, BALL::Reciprocal< Function, DataType >, BALL::ReducedSurface, BALL::RegularExpression, BALL::ReissCavFreeEnergyProcessor, BALL::RelHydrophobicVdWSurface, BALL::RelNegativePartialCharge, BALL::RelNegativePolarVdWSurface, BALL::RelNegativeVdWSurface, BALL::RelNumberOfRotatableBonds, BALL::RelNumberOfRotatableSingleBonds, BALL::RelPolarVdWSurface, BALL::RelPositivePartialCharge, BALL::RelPositivePolarVdWSurface, BALL::RelPositiveVdWSurface, BALL::Rescorer, BALL::Residue, BALL::ResidueIteratorTraits, BALL::ResidueRotamerSet, BALL::ResourceEntry::IteratorTraits_, BALL::ResourceEntry, BALL::Result, BALL::RingPerceptionProcessor, BALL::RombergIntegrator< Function, DataType >, BALL::RotamerLibrary, BALL::RotateBonds, BALL::RSEdge, BALL::RSFace, BALL::RSVertex, BALL::RuleEvaluator, BALL::RuleProcessor, BALL::SASEdge, BALL::SASFace, BALL::SASVertex, BALL::ScoringFunction, BALL::SCWRLRotamerFile, BALL::SDFile, BALL::SecondaryStructure, BALL::SecondaryStructureIteratorTraits, BALL::Selectable, BALL::Selector, BALL::SESEdge, BALL::SESFace, BALL::SESVertex, BALL::ShiftedLVMMMinimizer, BALL::ShiftModel, BALL::ShiftModule, BALL::SideChainPlacementProcessor, BALL::SimpleBase, BALL::SizeOfSSSR, BALL::SLICKEnergy, BALL::SLICKScore, BALL::SmartsMatcher::RecStruct_, BALL::SmartsMatcher::RecStructCore_, BALL::SmartsParser::SPAtom::Property, BALL::SnapShot, BALL::SnapShotManager, BALL::SolventDescriptor, BALL::SolventParameter, BALL::SquareFunction< Function, DataType >, BALL::SteepestDescentMinimizer, BALL::StrangLBFGSMinimizer, BALL::String, BALL::StringHashMap< Key >, BALL::Substring, BALL::Subtraction< First, Second, DataType >, BALL::SurfaceBase, BALL::System, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::TContour< T >, BALL::TContourLine< T >, BALL::TContourSurface< T >, BALL::Templates, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::Timer, BALL::TimeStamp, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TotalNegativePartialCharge, BALL::TotalPositivePartialCharge, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::Triangle, BALL::TrianglePoint, BALL::TriangulatedSAS, BALL::TriangulatedSES, BALL::TriangulatedSphere, BALL::TriangulatedSurface, BALL::Triple< T1, T2, T3 >, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TSurface< T >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::UhligCavFreeEnergyProcessor, BALL::VdWSurface, BALL::VdWVolume, BALL::VertexAdjacency, BALL::VertexAdjacencyEquality, BALL::VIEW::AddBackboneModel::ModelPart, BALL::VIEW::AddBallAndStickModel, BALL::VIEW::AtomBondModelBaseProcessor, BALL::VIEW::Box, BALL::VIEW::Camera, BALL::VIEW::ClippingPlane, BALL::VIEW::ColorExtension2, BALL::VIEW::ColorHSV, BALL::VIEW::ColorProcessor, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::Dataset, BALL::VIEW::Disc, BALL::VIEW::DockDialog, BALL::VIEW::DockingController, BALL::VIEW::DockingThread, BALL::VIEW::DockResultDialog, BALL::VIEW::GeometricFitDialog, BALL::VIEW::GeometricObject, BALL::VIEW::GridVisualisation, BALL::VIEW::HBondModelProcessor, BALL::VIEW::Hotkey, BALL::VIEW::Label, BALL::VIEW::LightSource, BALL::VIEW::Line, BALL::VIEW::Mesh, BALL::VIEW::MeshBuffer, BALL::VIEW::MultiColorExtension, BALL::VIEW::MultiLine, BALL::VIEW::PixelFormat, BALL::VIEW::Point, BALL::VIEW::RenderSetup, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager, BALL::VIEW::SimpleBox, BALL::VIEW::Sphere, BALL::VIEW::Tube, BALL::VIEW::TwoColoredLine, BALL::VIEW::TwoColoredTube, BALL::VIEW::UIOperationMode, BALL::VIEW::Vertex2, BALL::VIEW::Vertex, BALL::ZagrebIndex
- operator==() : BALL::Addition< First, Second, DataType >, BALL::AmberNonBonded, BALL::AmiraMeshFile, BALL::Atom::BondIteratorTraits, BALL::Atom, BALL::AtomContainer, BALL::AtomTypes, BALL::BaseIterator< Container, DataType, Position, Traits >, BALL::Bit, BALL::BitVector, BALL::Bond, BALL::CCP4File, BALL::Chain, BALL::CharmmEEF1, BALL::CharmmNonBonded, BALL::CHPI, BALL::CHPISlick, BALL::ClaverieParameter, BALL::ComposedEnergyProcessor, BALL::Composite::AncestorIteratorTraits, BALL::Composite::ChildCompositeIteratorTraits, BALL::Composite::CompositeIteratorTraits, BALL::Composite, BALL::CompositeIteratorTraits, BALL::Conformation, BALL::CosineTorsion, BALL::CosineTorsion::SingleValues, BALL::CosineTorsion::Values, BALL::CubicFunction< Function, DataType >, BALL::DCDFile, BALL::Directory, BALL::Division< First, Second, DataType >, BALL::DSN6File, BALL::EdgeItem< Node, Edge >, BALL::Element, BALL::EnergyMinimizer, BALL::EnergyProcessor, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_, BALL::EnumeratorIndex, BALL::Expression, BALL::ExpressionPredicate, BALL::ExpressionTree, BALL::File, BALL::ForceFieldParameters, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::Fragment, BALL::GraphEdge< Vertex, Edge, Face >, BALL::GraphFace< Vertex, Edge, Face >, BALL::GraphTriangle< Vertex, Edge, Face >, BALL::GraphVertex< Vertex, Edge, Face >, BALL::HashGrid3< Item >::BoxIteratorTraits, BALL::HashGrid3< Item >, BALL::HashGridBox3< Item >::BoxIteratorTraits, BALL::HashGridBox3< Item >::DataIteratorTraits, BALL::HashGridBox3< Item >, BALL::HashMap< Key, T >, BALL::HashSet< Key >::IteratorTraits, BALL::HashSet< Key >, BALL::HMOFile::HMOCharge, BALL::HMOFile, BALL::HydrogenBond, BALL::HydrogenBondSlick, BALL::INIFile::IteratorTraits_, BALL::INIFile, BALL::INIFile::Section, BALL::JCAMPFile::JCAMPValue, BALL::JCAMPFile, BALL::JohnsonBoveyShiftProcessor::Ring, BALL::LennardJones, BALL::LineBasedFile, BALL::Lipophilic, BALL::List< Value >, BALL::MMFF94NonBonded, BALL::Molecule, BALL::MutableConstant< DataType >, BALL::MutablePower< Function, DataType >, BALL::NamedProperty, BALL::NMRStarFile::NMRAtomData, BALL::NMRStarFile, BALL::NodeItem< Node, Edge >, BALL::NonpolarSolvation, BALL::NucleicAcid, BALL::Nucleotide, BALL::NumericalIntegrator< Function, DataType >, BALL::Object, BALL::Options, BALL::Pair6_12InteractionEnergyProcessor, BALL::Pair6_12RDFIntegrator, BALL::PairExpRDFIntegrator, BALL::Parameters, BALL::ParameterSection, BALL::PCMCavFreeEnergyProcessor, BALL::PDBAtom, BALL::PDBInfo, BALL::PDBRecords, BALL::Peak< PositionType >, BALL::PiecewiseFunction, BALL::PiecewisePolynomial, BALL::PierottiCavFreeEnergyProcessor, BALL::PLP, BALL::PolarSolvation, BALL::Potential1210, BALL::PreciseTime, BALL::Product< First, Second, DataType >, BALL::PropertyManager, BALL::Protein, BALL::PTE_, BALL::QuadraticImproperTorsion, BALL::QuadraticImproperTorsion::Values, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RadialDistributionFunction, BALL::RDFIntegrator, BALL::RDFSection, BALL::Reciprocal< Function, DataType >, BALL::RegularExpression, BALL::ReissCavFreeEnergyProcessor, BALL::Residue, BALL::ResidueTorsions::Data, BALL::ResourceEntry::IteratorTraits_, BALL::ResourceEntry, BALL::ResourceFile, BALL::RombergIntegrator< Function, DataType >, BALL::RSEdge, BALL::RSFace, BALL::RSVertex, BALL::RuleEvaluator, BALL::SASEdge, BALL::SASFace, BALL::SASVertex, BALL::SecondaryStructure, BALL::Selectable, BALL::Selector, BALL::SESEdge, BALL::SESFace, BALL::SESVertex, BALL::SnapShot, BALL::SolventDescriptor, BALL::SolventParameter, BALL::SortedPosition2, BALL::SortedPosition3, BALL::SquareFunction< Function, DataType >, BALL::String, BALL::StringHashMap< Key >, BALL::Substring, BALL::Subtraction< First, Second, DataType >, BALL::System, BALL::TAngle< T >, BALL::TBox3< T >, BALL::TCircle3< T >, BALL::TContour< T >, BALL::TContourLine< T >, BALL::TContourSurface< T >, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::Timer, BALL::TimeStamp, BALL::TLine3< T >, BALL::TMatrix4x4< T >, BALL::TPlane3< T >, BALL::TQuaternion< T >, BALL::TrajectoryFile, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::Triangle, BALL::TriangleEdge, BALL::TrianglePoint, BALL::Triple< T1, T2, T3 >, BALL::TRRFile, BALL::TSimpleBox3< T >, BALL::TSphere3< T >, BALL::TSurface< T >, BALL::TSurface< T >::Triangle, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::UhligCavFreeEnergyProcessor, BALL::VIEW::Camera, BALL::VIEW::ChannelFormat, BALL::VIEW::ClippingPlane, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue, BALL::VIEW::FrameBufferFormat, BALL::VIEW::GeometricObject, BALL::VIEW::Hotkey, BALL::VIEW::LightSource, BALL::VIEW::PixelFormat, BALL::VIEW::Renderer, BALL::VIEW::Representation, BALL::VIEW::RepresentationManager, BALL::VIEW::Stage
- operator>() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Element, BALL::EnumeratorIndex, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::INIFile::Section, BALL::Object, BALL::PDBRecords, BALL::Peak< PositionType >, BALL::PreciseTime, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::String, BALL::TAngle< T >, BALL::Timer, BALL::Triple< T1, T2, T3 >, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator>=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::Element, BALL::EnumeratorIndex, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::BackTrackingState_, BALL::FPTBondOrderStrategy::DPConfig_, BALL::Object, BALL::PDBRecords, BALL::Quadruple< T1, T2, T3, T4 >, BALL::RegularExpression, BALL::String, BALL::TAngle< T >, BALL::Timer, BALL::Triple< T1, T2, T3 >, BALL::VIEW::ColorHSV, BALL::VIEW::ColorRGBA, BALL::VIEW::ColorUnit, BALL::VIEW::ColorUnitHue
- operator>>() : BALL::CIFFile::Datablock, BALL::CIFFile::Datacontent, BALL::CIFFile::Item, BALL::CIFFile::SaveFrame, BALL::GAMESSDatFile::block, BALL::GenericMolFile, BALL::NMRStarFile::EntryInformation, BALL::NMRStarFile::MolecularSystem::ChemicalUnit, BALL::NMRStarFile::MolecularSystem, BALL::NMRStarFile::MolecularSystem::RelatedDB, BALL::NMRStarFile::MonomericPolymer::HomologDB, BALL::NMRStarFile::MonomericPolymer, BALL::NMRStarFile::NMRAtomData, BALL::NMRStarFile::NMRAtomDataSet, BALL::NMRStarFile::NMRSpectrometer, BALL::NMRStarFile::Sample::Component, BALL::NMRStarFile::Sample, BALL::NMRStarFile::SampleCondition, BALL::NMRStarFile::ShiftReferenceElement, BALL::NMRStarFile::ShiftReferenceSet, BALL::PDBFile, BALL::PersistenceManager, BALL::PersistentObject, BALL::SCWRLRotamerFile, BALL::ShiftModel1D, BALL::ShiftModel2D, BALL::TRRFile
- operator[]() : BALL::AtomVector, BALL::BitVector, BALL::ConformationSet, BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >, BALL::EmpiricalHSShiftProcessor::PropertiesForShift_, BALL::EnumeratorIndex, BALL::FPTBondOrderStrategy::Assignment_, BALL::FPTBondOrderStrategy::DPTable_, BALL::Gradient, BALL::HashMap< Key, T >, BALL::JCAMPFile, BALL::PDBRecords, BALL::PTE_, BALL::RandomAccessIterator< Container, DataType, Position, Traits >, BALL::ResidueRotamerSet, BALL::ScoreGridSet, BALL::String, BALL::Substring, BALL::TFFT1D< ComplexTraits >, BALL::TFFT2D< ComplexTraits >, BALL::TFFT3D< ComplexTraits >, BALL::TMatrix4x4< T >, BALL::TRegularData1D< ValueType >, BALL::TRegularData2D< ValueType >, BALL::TRegularData3D< ValueType >, BALL::TVector2< T >, BALL::TVector3< T >, BALL::TVector4< T >, BALL::VIEW::PixelFormat, BALL::VIEW::ShortcutRegistry
- operator^() : BALL::BitVector
- operator^=() : BALL::BitVector
- operator|() : BALL::BitVector, BALL::HashSet< Key >
- operator|=() : BALL::BitVector, BALL::HashSet< Key >
- operator~() : BALL::BitVector
- OPLSModel() : BALL::QSAR::OPLSModel
- optimize() : BALL::DNAMutator, BALL::Mutator, BALL::SideChainOptimizer
- optimizeCapPosition() : BALL::PeptideCapProcessor
- optimizeGridSize_() : BALL::GeometricFit
- optimizeParameters() : BALL::QSAR::ALLModel, BALL::QSAR::KNNModel, BALL::QSAR::KPLSModel, BALL::QSAR::Model, BALL::QSAR::OPLSModel, BALL::QSAR::PLSModel
- optimizeStructure() : BALL::VIEW::Scene
- Options() : BALL::Options
- other() : BALL::GraphEdge< Vertex, Edge, Face >
- out_() : BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer
- outfinish_() : BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer
- outheader_() : BALL::VIEW::STLRenderer, BALL::VIEW::VRMLRenderer
- OutOfGrid() : BALL::Exception::OutOfGrid
- OutOfMemory() : BALL::Exception::OutOfMemory
- OutOfRange() : BALL::Exception::OutOfRange
- output_() : BALL::VIEW::BALLThread
- outputEnabled() : BALL::LogStream
- overflow() : BALL::LogStreamBuf
- OverviewProcessor() : BALL::VIEW::AtomOverview::OverviewProcessor