BitMagic-C++
bm::gap_transpose_engine< GT, BT, BLOCK_SIZE > Class Template Reference

Bit-plain splicing of a GAP block. More...

#include <bmtrans.h>

Collaboration diagram for bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >:

Public Types

typedef tmatrix< GT, static_cast< unsigned >(sizeof(GT) *8), static_cast< unsigned >(((BLOCK_SIZE *sizeof(unsigned))/(sizeof(GT)))/(sizeof(GT) *8))> tmatrix_type
 cryptic calculation of equivalent size for the transpose matrix based on BLOCK_SIZE and sizeof(GT)(16)
 

Public Member Functions

 gap_transpose_engine ()
 
void transpose (const GT *BMRESTRICT gap_buf, BT *BMRESTRICT tmp_block)
 Transpose GAP block through a temp.
 
void transpose (const GT *BMRESTRICT garr, unsigned garr_size, BT *BMRESTRICT tmp_block)
 Transpose array of shorts.
 
void compute_distance_matrix ()
 
void reduce ()
 
void restore ()
 
void trestore (GT gap_head, GT *BMRESTRICT gap_buf, BT *BMRESTRICT tmp_block)
 Restore GAP block from the transposed matrix.
 

Data Fields

tmatrix_type tmatrix_
 
unsigned eff_cols_
 
unsigned distance_ [tmatrix_type::n_rows][tmatrix_type::n_rows]
 
unsigned char pc_vector_ [tmatrix_type::n_rows]
 
unsigned pc_vector_stat_ [bm::ibpc_end]
 
tmatrix_type::rstat rstat_vector_ [tmatrix_type::n_rows]
 

Detailed Description

template<typename GT, typename BT, unsigned BLOCK_SIZE>
class bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >

Bit-plain splicing of a GAP block.

GT - gap word type BT - block word type BLOCK_SIZE - bit block size in words (works as a transposition basis)

Definition at line 743 of file bmtrans.h.

Member Typedef Documentation

◆ tmatrix_type

template<typename GT , typename BT , unsigned BLOCK_SIZE>
tmatrix<GT, static_cast<unsigned>(sizeof(GT)*8), static_cast<unsigned>(((BLOCK_SIZE * sizeof(unsigned)) / (sizeof(GT))) / (sizeof(GT) * 8))> bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::tmatrix_type

cryptic calculation of equivalent size for the transpose matrix based on BLOCK_SIZE and sizeof(GT)(16)

matrix[size_of_gap*8][(Size_block_in_bytes / size_of_gap) / number_of_planes)]

Definition at line 754 of file bmtrans.h.

Constructor & Destructor Documentation

◆ gap_transpose_engine()

template<typename GT , typename BT , unsigned BLOCK_SIZE>
bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::gap_transpose_engine ( )
inline

Definition at line 756 of file bmtrans.h.

Member Function Documentation

◆ compute_distance_matrix()

◆ reduce()

template<typename GT , typename BT , unsigned BLOCK_SIZE>
void bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::reduce ( )
inline

◆ restore()

template<typename GT , typename BT , unsigned BLOCK_SIZE>
void bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::restore ( )
inline

◆ transpose() [1/2]

◆ transpose() [2/2]

◆ trestore()

Field Documentation

◆ distance_

template<typename GT , typename BT , unsigned BLOCK_SIZE>
unsigned bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::distance_[tmatrix_type::n_rows][tmatrix_type::n_rows]

◆ eff_cols_

◆ pc_vector_

template<typename GT , typename BT , unsigned BLOCK_SIZE>
unsigned char bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_[tmatrix_type::n_rows]

◆ pc_vector_stat_

template<typename GT , typename BT , unsigned BLOCK_SIZE>
unsigned bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::pc_vector_stat_[bm::ibpc_end]

◆ rstat_vector_

template<typename GT , typename BT , unsigned BLOCK_SIZE>
tmatrix_type::rstat bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >::rstat_vector_[tmatrix_type::n_rows]

Definition at line 858 of file bmtrans.h.

◆ tmatrix_


The documentation for this class was generated from the following file: