Here is a list of all functions, variables, defines, enums, and typedefs with links to the files they belong to:
- s -
- SanitiseUnknown() : hhalign_wrapper.c, hhalign_wrapper.h
- SEED_SELECTION : mbed.c
- SEED_SELECTION_TYPE : mbed.c
- SeedSelection() : mbed.c
- SELECT_SEEDS_BY_LENGTH : mbed.c
- SELECT_SEEDS_RANDOMLY : mbed.c
- SeqsAreAligned() : seq.c, seq.h
- SeqSwap() : seq.c, seq.h
- SeqToVec() : mbed.c
- SEQTYPE_DNA : seq.h
- SEQTYPE_PROTEIN : seq.h
- SEQTYPE_RNA : seq.h
- SEQTYPE_UNKNOWN : seq.h
- SeqTypeToStr() : seq.c, seq.h
- SequentialAlignmentOrder() : clustal-omega.h, clustal-omega.c
- SetAutoOptions() : clustal-omega.c
- SetDefaultAlnOpts() : clustal-omega.h, clustal-omega.c
- SetDefaultHhalignPara() : hhalign_wrapper.c, hhalign_wrapper.h
- SetLeafId() : muscle_tree.c, muscle_tree.h
- SetLeafName() : muscle_tree.c
- SHUFFLE_INPUT_SEQ_ORDER : clustal-omega.c
- ShuffleMSeq() : seq.c, seq.h
- SORT_INPUT_SEQS : clustal-omega.c
- SortAndTrackIndexCmpAsc() : util.c
- SortAndTrackIndexCmpDesc() : util.c
- SortMSeqByLength() : seq.c, seq.h
- STR_EQ : util.h
- STR_NC_EQ : util.h
- SymMatrixGetValue() : symmatrix.c, symmatrix.h
- SymMatrixGetValueP() : symmatrix.c, symmatrix.h
- SymMatrixPrint() : symmatrix.c, symmatrix.h
- SymMatrixRead() : symmatrix.c, symmatrix.h
- SymMatrixSetValue() : symmatrix.c, symmatrix.h