Package jebl.evolution.distances
Class JukesCantorDistanceMatrix
java.lang.Object
jebl.evolution.distances.BasicDistanceMatrix
jebl.evolution.distances.JukesCantorDistanceMatrix
- All Implemented Interfaces:
DistanceMatrix
Compute jukes-cantor corrected distance matrix for a set of aligned sequences.
Adapted from BEAST code by joseph.
- Version:
- $Id: JukesCantorDistanceMatrix.java 998 2009-04-09 03:06:19Z richardmoir $
- Author:
- Andrew Rambaut, Korbinian Strimmer, Joseph Heled
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Constructor Summary
ConstructorsConstructorDescriptionJukesCantorDistanceMatrix
(Alignment alignment, ProgressListener progress) JukesCantorDistanceMatrix
(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) -
Method Summary
Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
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Constructor Details
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JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress) throws CannotBuildDistanceMatrixException -
JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) throws CannotBuildDistanceMatrixException
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