Package jebl.evolution.trees
Class CalculateSplitRates
java.lang.Object
jebl.evolution.trees.CalculateSplitRates
Created by IntelliJ IDEA.
User: msuchard
Date: Dec 18, 2006
Time: 1:13:51 PM
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
addTreeToDensityMap
(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap, RootedTree tree) void
void
void
void
loadTrees
(int maxTrees, int burnIn) static void
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Field Details
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INDICATOR
- See Also:
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RATE
- See Also:
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numRateBoxes
public int numRateBoxes -
numTimeBoxes
public int numTimeBoxes -
edgeFraction
public double edgeFraction
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Constructor Details
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CalculateSplitRates
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Method Details
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loadTrees
- Throws:
IOException
ImportException
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displayStatistics
public void displayStatistics() -
addTreeToDensityMap
public void addTreeToDensityMap(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap, RootedTree tree) -
displayIntervals
public void displayIntervals() -
findTimeIntervals
public void findTimeIntervals() -
main
- Parameters:
args
- args[0] = Beast tree log, args[1] = max number of trees to read args[2] = number of burnin trees to discard args[3] = proportion file name, args[4] = density map filename
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