Package pal.treesearch
Interface ConstraintModel.GroupManager
- All Known Implementing Classes:
FixedBSRDTGlobalClockModel
,FixedSRDTGlobalClockModel
,GlobalClockModel
,MRDTGlobalClockModel
,SRDTGlobalClockModel
- Enclosing interface:
ConstraintModel
public static interface ConstraintModel.GroupManager
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Method Summary
Modifier and TypeMethodDescriptioncreateNewClockLeaf
(PatternInfo pattern, int[] patternStateMatchup) double
getBaseHeight
(double originalExpectSubstitutionHeight) int
double
getExpectedSubstitutionHeight
(double baseHeight) double
getLeafBaseHeight
(String leafLabel) void
initialiseParameters
(String[] leafNames, double[] leafHeights)
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Method Details
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getLeafBaseHeight
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getBaseHeight
double getBaseHeight(double originalExpectSubstitutionHeight) -
getExpectedSubstitutionHeight
double getExpectedSubstitutionHeight(double baseHeight) -
getBaseHeightUnits
int getBaseHeightUnits() -
initialiseParameters
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getAllGroupRelatedParameterAccess
NeoParameterized getAllGroupRelatedParameterAccess() -
getPrimaryGroupRelatedParameterAccess
NeoParameterized getPrimaryGroupRelatedParameterAccess() -
getSecondaryGroupRelatedParameterAccess
NeoParameterized getSecondaryGroupRelatedParameterAccess() -
createNewClockLeaf
MolecularClockLikelihoodModel.Leaf createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup) -
createNewClockExternal
MolecularClockLikelihoodModel.External createNewClockExternal() -
createNewClockInternal
MolecularClockLikelihoodModel.Internal createNewClockInternal()
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