Package pal.distance
Class ReadDistanceMatrix
java.lang.Object
pal.distance.DistanceMatrix
pal.distance.ReadDistanceMatrix
- All Implemented Interfaces:
Serializable
,IdGroup
reads pairwise distance matrices in PHYLIP format
(full matrix)
- Version:
- $Id: ReadDistanceMatrix.java,v 1.4 2002/12/05 04:27:28 matt Exp $
- Author:
- Korbinian Strimmer, Alexei Drummond
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
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Constructor Summary
ConstructorsConstructorDescriptionReadDistanceMatrix
(PushbackReader input) read from streamReadDistanceMatrix
(String file) read from file -
Method Summary
Methods inherited from class pal.distance.DistanceMatrix
absoluteDistance, addDistance, getClonedDistances, getClosestIndex, getClosestIndex, getDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setDistances, setIdentifier, setIdGroup, squaredDistance, toString, whichIdNumber
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Constructor Details
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ReadDistanceMatrix
read from stream- Throws:
DistanceParseException
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ReadDistanceMatrix
read from file- Throws:
DistanceParseException
IOException
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