Uses of Interface
pal.substmodel.SingleSplitDistribution
Packages that use SingleSplitDistribution
Package
Description
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
Classes describing substitution models, i.e.
-
Uses of SingleSplitDistribution in pal.eval
Methods in pal.eval with parameters of type SingleSplitDistributionModifier and TypeMethodDescriptionstatic final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime) static final MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel.createInstance
(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime) -
Uses of SingleSplitDistribution in pal.substmodel
Classes in pal.substmodel that implement SingleSplitDistributionModifier and TypeClassDescriptionclass
Title: ConstantIndependentSingleSplitDistributionclass
Title: SaturatedSingleSplitDistributionclass
Title: VariableIndependentSingleSplitDistribution