Uses of Class
pal.tree.SimulatedAlignment.Factory
Packages that use SimulatedAlignment.Factory
Package
Description
Classes to model population genetic processes using the coalescent.
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Uses of SimulatedAlignment.Factory in pal.coalescent
Constructors in pal.coalescent with parameters of type SimulatedAlignment.FactoryModifierConstructorDescriptionSerialCoalescentGenerator
(TimeOrderCharacterData tocd, DemographicModel demographicModel, int numberOfTreesToGenerate, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory) SerialCoalescentGenerator
(TimeOrderCharacterData tocd, DemographicModel demographicModel, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory) -
Uses of SimulatedAlignment.Factory in pal.supgma
Methods in pal.supgma with parameters of type SimulatedAlignment.FactoryModifier and TypeMethodDescriptionSUPGMABase.PopulationParameters.inferCI
(AlgorithmCallback callback, int numberOfReplicates, SimulatedAlignment.Factory alignmentFactory, SubstitutionModel evolutionaryModel, LMSSolver solver)