Package pal.mep
Class DeltaModel.Utils
java.lang.Object
pal.mep.DeltaModel.Utils
- Enclosing interface:
DeltaModel
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic final DeltaModel
getDisjointBased
(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD) static final DeltaModel
getMutationRateModelBased
(MutationRateModel.Factory mepFactory) For interfacing with time based mutation rate modelsstatic final DeltaModel
For serial sampled analysis when no time information is available.static final DeltaModel
getUntimedBased
(double[] initalDeltas) For serial sampled analysis when no time information is available.
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Constructor Details
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Utils
public Utils()
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Method Details
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getMutationRateModelBased
For interfacing with time based mutation rate models -
getUntimedBased
For serial sampled analysis when no time information is available. -
getUntimedBased
For serial sampled analysis when no time information is available.- Parameters:
initialDeltas
- , if not of required length (for given tocd) uses subset (or sets remainder to zero)
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getDisjointBased
public static final DeltaModel getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)
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