Package pal.alignment

Class JumbledAlignment

java.lang.Object
pal.alignment.AbstractAlignment
pal.alignment.JumbledAlignment
All Implemented Interfaces:
Serializable, Alignment, IdGroup, Report

public class JumbledAlignment extends AbstractAlignment
generates jumbled alignments (randomizing input order of sequences)
Version:
$Id: JumbledAlignment.java,v 1.4 2001/07/13 14:39:12 korbinian Exp $
Author:
Korbinian Strimmer, Alexei Drummond
See Also:
  • Constructor Details

    • JumbledAlignment

      public JumbledAlignment(Alignment raw)
  • Method Details

    • getData

      public char getData(int seq, int site)
      sequence alignment at (sequence, site)
      Specified by:
      getData in interface Alignment
      Specified by:
      getData in class AbstractAlignment
    • jumble

      public void jumble()
      jumble sequences (rearrange input order)