libpappsomspp
Library for mass spectrometry
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pappso::MzRange Class Reference

#include <mzrange.h>

Public Member Functions

 MzRange (pappso_double mz, PrecisionPtr precision)
 
 MzRange (pappso_double mz, pappso_double delta)
 Construct a MzRange object with mz and delta.
 
 MzRange (pappso_double mz, PrecisionPtr precision_lower, PrecisionPtr precision_upper)
 Constructs MzRange object using 2 different precisions: lower and upper.
 
 MzRange (const MzRange &other)
 
virtual ~MzRange ()
 
MzRangeoperator= (const MzRange &other)
 
MzRangeoperator+= (const MzRange &other)
 
MzRangeoperator*= (double number)
 
pappso_double getMz () const
 
bool contains (pappso_double) const
 
QString toString () const
 
pappso_double lower () const
 
pappso_double upper () const
 

Private Attributes

pappso_double m_mz
 
pappso_double m_delta
 

Detailed Description

Definition at line 45 of file mzrange.h.

Constructor & Destructor Documentation

◆ MzRange() [1/4]

pappso::MzRange::MzRange ( pappso_double mz,
PrecisionPtr precision )

Constructs MzRange object using 1 precision (the same for lower or upper range).

Definition at line 43 of file mzrange.cpp.

44 : m_mz(mz), m_delta(precision->delta(m_mz))
45{
46}
pappso_double m_delta
Definition mzrange.h:85
pappso_double m_mz
Definition mzrange.h:84

◆ MzRange() [2/4]

pappso::MzRange::MzRange ( pappso_double mz,
pappso_double delta )

Construct a MzRange object with mz and delta.

delta should be construed as the whole tolerance such that lower() returns m_mz - m_delta and upper() returns m_mz + m_delta.

Definition at line 56 of file mzrange.cpp.

57 : m_mz(mz), m_delta(delta)
58{
59}

◆ MzRange() [3/4]

pappso::MzRange::MzRange ( pappso_double mz,
PrecisionPtr precision_lower,
PrecisionPtr precision_upper )

Constructs MzRange object using 2 different precisions: lower and upper.

Definition at line 63 of file mzrange.cpp.

66{
67
68 m_delta = (precision_lower->delta(mz) + precision_upper->delta(mz)) / 2;
69 m_mz = mz - precision_lower->delta(mz) + m_delta;
70}

References pappso::PrecisionBase::delta(), m_delta, m_mz, and pappso::mz.

◆ MzRange() [4/4]

pappso::MzRange::MzRange ( const MzRange & other)

Definition at line 73 of file mzrange.cpp.

74 : m_mz(other.m_mz), m_delta(other.m_delta)
75{
76 // std::cout << "MzRange::MzRange (const MzRange & other)" << std::endl;
77}

◆ ~MzRange()

pappso::MzRange::~MzRange ( )
virtual

Definition at line 80 of file mzrange.cpp.

81{
82}

Member Function Documentation

◆ contains()

bool pappso::MzRange::contains ( pappso_double mz) const

Definition at line 120 of file mzrange.cpp.

121{
122 // qDebug() << " " << std::abs(mz - m_mz) << " m_delta:" << m_delta;
123 if(std::abs(mz - m_mz) <= m_delta)
124 {
125 return true;
126 }
127 return false;
128}

References m_delta, m_mz, and pappso::mz.

Referenced by pappso::MorpheusScore::MorpheusScore(), pappso::MassSpectrum::equals(), pappso::MsRunXicExtractorDisk::extractOneXicCoord(), pappso::OboListProxyModel::filterAcceptsRow(), pappso::MassSpectrumWidget::plot(), pappso::PeptideNaturalIsotopeAverage::recursiveDepletion(), and pappso::FilterOboPsiModTermDiffMono::setOboPsiModTerm().

◆ getMz()

pappso_double pappso::MzRange::getMz ( ) const

Definition at line 114 of file mzrange.cpp.

115{
116 return m_mz;
117}

References m_mz.

Referenced by pappso::specglob::ExperimentalSpectrum::reverseFindDiffMz().

◆ lower()

◆ operator*=()

MzRange & pappso::MzRange::operator*= ( double number)

Definition at line 105 of file mzrange.cpp.

106{
107 m_mz *= number;
108 m_delta *= number;
109
110 return *this;
111}

References m_delta, and m_mz.

◆ operator+=()

MzRange & pappso::MzRange::operator+= ( const MzRange & other)

Definition at line 96 of file mzrange.cpp.

97{
98 m_mz += other.m_mz;
99 m_delta += other.m_delta;
100
101 return *this;
102}

References m_delta, and m_mz.

◆ operator=()

MzRange & pappso::MzRange::operator= ( const MzRange & other)

Definition at line 86 of file mzrange.cpp.

87{
88 m_mz = other.m_mz;
89 m_delta = other.m_delta;
90
91 return *this;
92}

References m_delta, and m_mz.

◆ toString()

QString pappso::MzRange::toString ( ) const

Definition at line 131 of file mzrange.cpp.

132{
133 // QString s = "mz=" + QString::number(m_mz) + " delta=" +
134 // QString::number(m_delta);
135 return QString("mz=%1 delta=%2 : %3 < %4 < %5")
136 .arg(m_mz)
137 .arg(m_delta)
138 .arg(lower())
139 .arg(m_mz)
140 .arg(upper());
141}
pappso_double lower() const
Definition mzrange.h:71
pappso_double upper() const
Definition mzrange.h:77

References lower(), m_delta, m_mz, and upper().

◆ upper()

Member Data Documentation

◆ m_delta

pappso_double pappso::MzRange::m_delta
private

Definition at line 85 of file mzrange.h.

Referenced by MzRange(), contains(), operator*=(), operator+=(), operator=(), and toString().

◆ m_mz

pappso_double pappso::MzRange::m_mz
private

Definition at line 84 of file mzrange.h.

Referenced by MzRange(), contains(), getMz(), operator*=(), operator+=(), operator=(), and toString().


The documentation for this class was generated from the following files: