libpappsomspp
Library for mass spectrometry
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timsdirectxicextractor.h
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1/**
2 * \file pappsomspp/vendors/tims/xicextractor/timsdirectxicextractor.h
3 * \date 21/09/2019
4 * \author Olivier Langella
5 * \brief minimum functions to extract XICs from Tims Data
6 */
7
8/*******************************************************************************
9 * Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
10 *
11 * This file is part of the PAPPSOms++ library.
12 *
13 * PAPPSOms++ is free software: you can redistribute it and/or modify
14 * it under the terms of the GNU General Public License as published by
15 * the Free Software Foundation, either version 3 of the License, or
16 * (at your option) any later version.
17 *
18 * PAPPSOms++ is distributed in the hope that it will be useful,
19 * but WITHOUT ANY WARRANTY; without even the implied warranty of
20 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 * GNU General Public License for more details.
22 *
23 * You should have received a copy of the GNU General Public License
24 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25 *
26 ******************************************************************************/
27
28#pragma once
29
31namespace pappso
32{
33/**
34 * @todo write docs
35 */
37{
38 public:
39 /**
40 * Default constructor
41 */
43
44 /**
45 * Destructor
46 */
48
49 protected:
51 UiMonitorInterface &monitor,
52 std::vector<XicCoordSPtr>::iterator it_xic_coord_list_begin,
53 std::vector<XicCoordSPtr>::iterator it_xic_coord_list_end) override;
54};
55} // namespace pappso
TimsDirectXicExtractor(MsRunReaderSPtr &msrun_reader)
void protectedExtractXicCoordSPtrList(UiMonitorInterface &monitor, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_begin, std::vector< XicCoordSPtr >::iterator it_xic_coord_list_end) override
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< MsRunReader > MsRunReaderSPtr
Definition msrunreader.h:56
minimum functions to extract XICs from Tims Data