libpappsomspp
Library for mass spectrometry
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grpsubgroup.h
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1/*******************************************************************************
2 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3 *
4 * This file is part of the PAPPSOms++ library.
5 *
6 * PAPPSOms++ is free software: you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation, either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * PAPPSOms++ is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18 *
19 * Contributors:
20 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21 *implementation
22 ******************************************************************************/
23
24
25#pragma once
26
27
28#include <memory>
29#include <vector>
30#include "grpprotein.h"
31#include "grppeptideset.h"
32
33
34namespace pappso
35{
36
37class GrpSubGroup;
38typedef std::shared_ptr<const GrpSubGroup> GrpSubGroupSpConst;
39typedef std::shared_ptr<GrpSubGroup> GrpSubGroupSp;
40
41
43{
44 private:
45 std::vector<GrpProtein *> m_grpProteinPtrList;
47 unsigned int m_subGroupNumber = 0;
48 unsigned int m_groupNumber = 0;
49
50 public:
51 GrpSubGroup(GrpProtein *p_protein);
52 GrpSubGroup(const GrpSubGroup &other);
53
54
55 /** \brief sort subgroups between each other
56 * a subgroup containing less peptides is weaker (less) than the other
57 */
58 bool operator<(const GrpSubGroup &other) const;
61 const GrpPeptideSet &getPeptideSet() const;
62 bool merge(GrpSubGroup *p_subgroup);
63 bool includes(const GrpSubGroup *p_subgroup) const;
64 void numbering();
65 void setSubGroupNumber(unsigned int i);
66 void setGroupNumber(unsigned int i);
67 const QString &getFirstAccession() const;
68
69 std::size_t peptideListSize() const;
70 unsigned int maxCount() const;
71
72
73 const QString getGroupingId() const;
74 unsigned int getGroupNumber() const;
75 unsigned int getSubGroupNumber() const;
76
77 const std::vector<GrpProtein *> &getGrpProteinList() const;
78};
79
80
81} // namespace pappso
bool operator<(const GrpSubGroup &other) const
sort subgroups between each other a subgroup containing less peptides is weaker (less) than the other
std::vector< GrpProtein * > m_grpProteinPtrList
Definition grpsubgroup.h:45
unsigned int getSubGroupNumber() const
unsigned int getGroupNumber() const
void setSubGroupNumber(unsigned int i)
const GrpPeptideSet & getPeptideSet() const
GrpSubGroup(GrpProtein *p_protein)
const QString getGroupingId() const
void setGroupNumber(unsigned int i)
bool includes(const GrpSubGroup *p_subgroup) const
std::size_t peptideListSize() const
unsigned int maxCount() const
unsigned int m_groupNumber
Definition grpsubgroup.h:48
const QString & getFirstAccession() const
bool merge(GrpSubGroup *p_subgroup)
unsigned int m_subGroupNumber
Definition grpsubgroup.h:47
const std::vector< GrpProtein * > & getGrpProteinList() const
GrpPeptideSet m_peptidePtrList
Definition grpsubgroup.h:46
GrpSubGroupSp makeGrpSubGroupSp()
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
std::shared_ptr< const GrpSubGroup > GrpSubGroupSpConst
Definition grpsubgroup.h:38
std::shared_ptr< GrpSubGroup > GrpSubGroupSp
Definition grpsubgroup.h:39