libpappsomspp
Library for mass spectrometry
Loading...
Searching...
No Matches
peakionmatch.h
Go to the documentation of this file.
1
/**
2
* \file pappsomspp/psm/peakionmatch.h
3
* \date 4/4/2015
4
* \author Olivier Langella
5
* \brief associate a peak and a peptide + charge
6
*/
7
8
/*******************************************************************************
9
* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
10
*
11
* This file is part of the PAPPSOms++ library.
12
*
13
* PAPPSOms++ is free software: you can redistribute it and/or modify
14
* it under the terms of the GNU General Public License as published by
15
* the Free Software Foundation, either version 3 of the License, or
16
* (at your option) any later version.
17
*
18
* PAPPSOms++ is distributed in the hope that it will be useful,
19
* but WITHOUT ANY WARRANTY; without even the implied warranty of
20
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21
* GNU General Public License for more details.
22
*
23
* You should have received a copy of the GNU General Public License
24
* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25
*
26
* Contributors:
27
* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
28
*implementation
29
******************************************************************************/
30
31
#pragma once
32
33
#include "
../exportinmportconfig.h
"
34
#include "
../massspectrum/massspectrum.h
"
35
#include "
../peptide/peptidefragmention.h
"
36
37
namespace
pappso
38
{
39
class
PMSPP_LIB_DECL
PeakIonMatch
40
{
41
public
:
42
PeakIonMatch
(
const
DataPoint
&peak,
43
const
PeptideFragmentIonSp
&ion_sp,
44
unsigned
int
charge);
45
PeakIonMatch
(
const
PeakIonMatch
&other);
46
PeakIonMatch
(
PeakIonMatch
&&other);
47
virtual
~PeakIonMatch
();
48
49
PeakIonMatch
&operator=(
const
PeakIonMatch
&other);
50
51
virtual
const
PeptideFragmentIonSp
&getPeptideFragmentIonSp()
const
;
52
53
const
DataPoint
&getPeak()
const
;
54
55
unsigned
int
getCharge()
const
;
56
57
PeptideIon
getPeptideIonType()
const
;
58
PeptideDirection
getPeptideIonDirection
()
const
;
59
60
virtual
QString toString()
const
;
61
62
63
private
:
64
DataPoint
_peak
;
65
PeptideFragmentIonSp
_ion_sp
;
66
unsigned
int
_charge
;
67
};
68
}
// namespace pappso
pappso::PeakIonMatch
Definition
peakionmatch.h:40
pappso::PeakIonMatch::_ion_sp
PeptideFragmentIonSp _ion_sp
Definition
peakionmatch.h:65
pappso::PeakIonMatch::_charge
unsigned int _charge
Definition
peakionmatch.h:66
pappso::PeakIonMatch::_peak
DataPoint _peak
Definition
peakionmatch.h:64
exportinmportconfig.h
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
massspectrum.h
basic mass spectrum
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::PeptideIon
PeptideIon
PeptideIon enum defines all types of ions (Nter or Cter)
Definition
types.h:432
pappso::getPeptideIonDirection
PeptideDirection getPeptideIonDirection(PeptideIon ion_type)
get the direction of a peptide ion
Definition
peptide.cpp:70
pappso::PeptideFragmentIonSp
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
Definition
peptidefragmention.h:46
pappso::PeptideDirection
PeptideDirection
Definition
peptide.h:46
peptidefragmention.h
peptide ion model
pappso::DataPoint
Definition
datapoint.h:22
pappsomspp
psm
peakionmatch.h
Generated on Fri Jul 19 2024 14:40:15 for libpappsomspp by
1.12.0