libpappsomspp
Library for mass spectrometry
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timsmsfilereader.h
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1/**
2 * \file pappsomspp/msfile/timsmsfilereader.h
3 * \date 06/09/2019
4 * \author Olivier Langella
5 * \brief MSrun file reader for native Bruker TimsTOF raw data
6 */
7
8/*******************************************************************************
9 * Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
10 *
11 * This file is part of the PAPPSOms++ library.
12 *
13 * PAPPSOms++ is free software: you can redistribute it and/or modify
14 * it under the terms of the GNU General Public License as published by
15 * the Free Software Foundation, either version 3 of the License, or
16 * (at your option) any later version.
17 *
18 * PAPPSOms++ is distributed in the hope that it will be useful,
19 * but WITHOUT ANY WARRANTY; without even the implied warranty of
20 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 * GNU General Public License for more details.
22 *
23 * You should have received a copy of the GNU General Public License
24 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25 *
26 ******************************************************************************/
27
28
29#pragma once
30
31#include "msfilereader.h"
32#include "../msrun/msrunid.h"
34
35namespace pappso
36{
37
38/**
39 * @todo write docs
40 */
42{
43 public:
44 TimsMsFileReader(const QString &file_name);
45 virtual ~TimsMsFileReader();
46
47 virtual MsDataFormat getFileFormat() override;
48
49 virtual std::vector<MsRunIdCstSPtr>
50 getMsRunIds(const QString &run_prefix) override;
51
52 MsRunReader *selectMsRunReader(const QString &file_name) const;
53
54 private:
55 virtual std::size_t initialize();
56};
57} // namespace pappso
base class to read MSrun the only way to build a MsRunReader object is to use the MsRunReaderFactory
Definition msrunreader.h:63
virtual std::size_t initialize()
virtual MsDataFormat getFileFormat() override
virtual std::vector< MsRunIdCstSPtr > getMsRunIds(const QString &run_prefix) override
TimsMsFileReader(const QString &file_name)
MsRunReader * selectMsRunReader(const QString &file_name) const
base interface to read MSrun files
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
MsDataFormat
Definition types.h:120