libpappsomspp
Library for mass spectrometry
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peptideproformaparser.h
Go to the documentation of this file.
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/**
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* \file pappsomspp/peptide/peptideproformaparser.h
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* \date 27/11/2023
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* \author Olivier Langella
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* \brief parse peptide string in ProForma to pappso::Peptide
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* https://github.com/HUPO-PSI/ProForma/blob/master/README.md
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*/
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/*******************************************************************************
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* Copyright (c) 2023 Olivier Langella
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*<Olivier.Langella@universite-paris-saclay.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include "
peptide.h
"
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namespace
pappso
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{
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/**
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* @todo write docs
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*/
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class
PMSPP_LIB_DECL
PeptideProFormaParser
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{
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public
:
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static
PeptideSp
parseString(
const
QString &pepstr);
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static
NoConstPeptideSp
parseNoConstString(
const
QString &pepstr);
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private
:
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static
void
parseStringToPeptide(
const
QString &pepstr,
Peptide
&peptide);
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private
:
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// static QRegularExpression _mod_parser;
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static
QRegularExpression
_rx_psimod
;
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static
QRegularExpression
_rx_modmass
;
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};
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}
// namespace pappso
pappso::PeptideProFormaParser
Definition
peptideproformaparser.h:39
pappso::PeptideProFormaParser::_rx_psimod
static QRegularExpression _rx_psimod
Definition
peptideproformaparser.h:51
pappso::PeptideProFormaParser::_rx_modmass
static QRegularExpression _rx_modmass
Definition
peptideproformaparser.h:52
pappso::Peptide
Definition
peptide.h:100
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition
exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition
aa.cpp:39
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition
aamodification.h:48
pappso::NoConstPeptideSp
std::shared_ptr< Peptide > NoConstPeptideSp
Definition
peptide.h:97
peptide.h
peptide model
pappsomspp
peptide
peptideproformaparser.h
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