vg
tools for working with variation graphs
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mapper.cpp File Reference

Namespaces

namespace  vg
 

Functions

int vg::sub_overlaps_of_first_aln (const vector< Alignment > &alns, float overlap_fraction)
 
set< pos_tvg::gcsa_nodes_to_positions (const vector< gcsa::node_type > &nodes)
 
const int vg::balanced_stride (int read_length, int kmer_size, int stride)
 
const vector< string > vg::balanced_kmers (const string &seq, const int kmer_size, const int stride)